PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G116000.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 170aa    MW: 17851.8 Da    PI: 8.2415
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G116000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16.1e-13731125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+ Cr++L YPrGA++V+CalC+t+
  Gorai.009G116000.3  7 CSRCRNILLYPRGATNVCCALCNTI 31
                        9**********************97 PP

2zf-LSD142.98.2e-144670125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggCrtlL+Y+ GA+sVRC++C+ +
  Gorai.009G116000.3 46 CGGCRTLLMYTCGATSVRCSCCNII 70
                        **********************976 PP

3zf-LSD147.23.7e-1584108125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GApsV+Ca+C+ V
  Gorai.009G116000.3  84 CGHCRTTLMYPYGAPSVKCAVCHYV 108
                         **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-12534IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-144373IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-114669IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-1281111IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQSEVVCSRC RNILLYPRGA TNVCCALCNT ITQVPPPGME MAQLVCGGCR TLLMYTCGAT  60
SVRCSCCNII NHVTASNPMA HINCGHCRTT LMYPYGAPSV KCAVCHYVTN VGVSTGNVRC  120
PLPASRPNAT GTMPSTSTSQ TVVVENPMSV DESGKLVSNV VVGITTDKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446874.11e-116PREDICTED: protein LSD1-like isoform X1
RefseqXP_012446873.11e-116PREDICTED: protein LSD1-like isoform X1
SwissprotP940779e-68LSD1_ARATH; Protein LSD1
TrEMBLA0A0B0NU081e-112A0A0B0NU08_G
STRINGGLYMA08G13630.13e-85(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-69LSD family protein